Tools for processing and analyzing transcriptomics, proteomics and metabolomics data
BioPathAt - Annotation and visualization resource to display transcriptomics, proteomics and metabolomics data sets on maps of Arabidopsis thaliana metabolic pathways.
Spektraris - Resource for searching HPLC-MS and HPLC-MS/MS data againast a database of plant natural products.
Mint Genomics Resource (MGR) - Information about species from the Lamiaceae (mint) family. With a focus on specialized metabolism, MGR includes detailed pathway diagrams, and RNA-seq datasets
The development of the Spektraris tool was funded by a grant from the National Institutes of Health.
We also collaborated with Drs. Steve Fisher and Theo Sana from Agilent Technologies Inc.
(in alphabetical order)
Dan Cuthbertson (2011-2012); metabolomics data acquisition and processing.
Majid Ghassemian (2001-2004); BioPathAt development.
Blake Herron (2012-2013); metabolomics data acquisition and processing.
Sean Johnson (2012 to present); Spektraris and Mint Genomics Resource development.
Mark Lange (2000 to present); project management and tool validation.