Research

Tools for processing and analyzing transcriptomics, proteomics and metabolomics data

BioPathAt - Annotation and visualization resource to display transcriptomics, proteomics and metabolomics data sets on maps of Arabidopsis thaliana metabolic pathways.

Spektraris - Resource for searching HPLC-MS and HPLC-MS/MS data againast a database of plant natural products.

Mint Genomics Resource (MGR) - Information about species from the Lamiaceae (mint) family. With a focus on specialized metabolism, MGR includes detailed pathway diagrams, and RNA-seq datasets

 

 

 

 

 

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Comments

The development of the Spektraris tool was funded by a grant from the National Institutes of Health.

We also collaborated with Drs. Steve Fisher and Theo Sana from Agilent Technologies Inc.

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Participants:
(in alphabetical order)

Dan Cuthbertson (2011-2012); metabolomics data acquisition and processing.

Majid Ghassemian (2001-2004); BioPathAt development.

Blake Herron (2012-2013); metabolomics data acquisition and processing.

Sean Johnson (2012 to present); Spektraris and Mint Genomics Resource development.

Mark Lange (2000 to present); project management and tool validation.