Downloads

Horse mint (Mentha longifolia (L.) Huds.)

File Description Owner Reference
Genome v3.01b assembly Genome assembly V3.01b

Lange (WSU);
Vining (OSU)

  
Genome v3.01b proteins sequences FASTA file of proteins in the v3.01b assembly as predicted by Maker Lange (WSU);
Vining (OSU)		  
Genome v3.01b transcript sequences FASTA file of coding sequences of transcripts in the v3.01b assembly as predicted by Maker Lange (WSU);
Vining (OSU)		  
Genome v3.01b Maker gene predictions GFF3 file of gene predictions using the tool Maker. Lange (WSU);
Vining (OSU)		  
File Description Owner Reference
Genome v1,0 assembly Genome assembly V1 from Illumina and PacBio reads. Vining (OSU); Lange (WSU) Vining et al. (2017) Mol. Plant 10, 323-339

 

File Description Owner Reference
Illumina short reads

mRNA isolated from glandular trichomes of M. arvensis at two leaf developmental stages: less than half full length, and full length.
50 nt Illumina HighSeq-2000 single end reads.

 Lange (WSU) unpublished

Erospicata (Mentha spicata var erospicata)

File Description Owner Reference
Illumina short reads mRNA isolated from glandular trichomes of Erospicata (a subspecies of M. spicata L.) at two leaf developmental stages: less than half full length, and full length.
50 nt Illumina HighSeq-2000 single end reads.		 Lange (WSU) unpublished

Assorted mint species

File Description Owner Reference
annotations_20140624.xls Annotations for the June 24, 2014 assemblies of the glandular trichome transcriptomes for peppermint, spearmint, and watermint (see the corresponding fasta files in their respective sections). Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191

Peppermint (Mentha x piperita L.)

File Description Owner Reference
Expressed Sequence Tags ESTs from peppermint glandular trichomes. Croteau, Lange (WSU) Lange et al. (2000) Proc. Natl. Acad. Sci. USA 97, 2934-2939
Illumina short reads mRNA isolated from glandular trichomes of M. x piperita at two leaf developmental stages: less than half full length, and full length.
50 nt Illumina HighSeq-2000 single end reads.		 Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191
Transcriptome_20140624

Contigs assembled from peppermint glandular trichome Illumina reads by the Trinity assembler.
See file "annotations_20140624.xls" under heading "Other" for contig annotations and assembly methodology.

 Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191
combined transcriptome assembly This assembly was derived from a pool of transcriptome reads from several closely related species: M. x piperita, M. aquatica, and M. spicata. M. x piperita is a hybrid of M. aquatica and M. spicata.
mRNA was isolated from glandular trichomes at two leaf developmental stages from three species. The developmental stages were young (less than half full length) and mature (full length) leaves. mRNA was sequenced by Illumina HiSeq-2000.
The resulting 50nt single end reads were trimmed to 38nt. The trimmed reads were pooled together with a set of peppermint EST sequences and assembled with Trinity.		 Lange (WSU) unpublished

Spearmint (Mentha spicata L.)

File Description Owner Reference
Illumina short reads mRNA isolated from glandular trichomes of M. spicata at two leaf developmental stages: less than half full length, and full length.
50 nt Illumina HighSeq-2000 single end reads.		 Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191
Transcriptome_20140624 Contigs assembled from spearmint glandular trichome Illumina reads by the Trinity assembler.
See file "annotations_20140624.xls" under heading "Other" for contig annotations and assembly methodology.		 Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191

Watermint (Mentha aquatica L.)

File Description Owner Reference
Illumina short reads mRNA isolated from glandular trichomes of Mentha aquatica at two leaf development stages: less than half full length, and full length. 50 nt Illumina HighSeq-2000 single end reads. Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191
Transcriptome_20140624 Contigs assembled from watermint glandular trichome Illumina reads by the Trinity assembler.
See file "annotations_20140624.xls" under heading "Other" for contig annotations and assembly methodology.		 Lange (WSU) Ahkami et al. (2015) Mol Plant. 8, 188-191