| File | Description | Owner | Reference |
|---|---|---|---|
| Genome assembly | Genome assembly from Illumina and PacBio reads. | Vining (OSU); Lange (WSU) | Vining et al. (in preparation) |
| File | Description | Owner | Reference |
|---|---|---|---|
| Illumina short reads |
mRNA isolated from glandular trichomes of M. arvensis at two leaf developmental stages: less than half full length, and full length. |
Lange (WSU) | unpublished |
| File | Description | Owner | Reference |
|---|---|---|---|
| Illumina short reads | mRNA isolated from glandular trichomes of Erospicata (a subspecies of M. spicata L.) at two leaf developmental stages: less than half full length, and full length. 50 nt Illumina HighSeq-2000 single end reads. |
Lange (WSU) | unpublished |
| File | Description | Owner | Reference |
|---|---|---|---|
| annotations_20140624.xls | Annotations for the June 24, 2014 assemblies of the trichome transcriptomes for peppermint, spearmint, and watermint (see the corresponding fasta files in their respective sections). | Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| File | Description | Owner | Reference |
|---|---|---|---|
| Expressed Sequence Tags | ESTs from peppermint glandular trichomes. | Croteau (WSU) | Lange B.M. et al. (2000) Proc. Natl. Acad. Sci. USA 97, 2934-2939 |
| Illumina short reads | mRNA isolated from glandular trichomes of M. x piperita at two leaf developmental stages: less than half full length, and full length. 50 nt Illumina HighSeq-2000 single end reads. |
Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| Transcriptome_20140624 |
Contigs assembled from peppermint glandular trichome Illumina reads by the Trinity assembler. |
Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| combined transcriptome assembly | This assembly was derived from a pool of transcriptome reads from several closely related species: M. x piperita, M. aquatica, and M. spicata. M. x piperita is a hybrid of M. aquatica and M. spicata. mRNA was isolated from glandular trichomes at two leaf developmental stages from three species. The developmental stages were young (less than half full length) and mature (full length) leaves. mRNA was sequenced by Illumina HiSeq-2000. The resulting 50nt single end reads were trimmed to 38nt. The trimmed reads were pooled together with a set of peppermint EST sequences and assembled with Trinity. |
Lange (WSU) | unpublished |
| File | Description | Owner | Reference |
|---|---|---|---|
| Illumina short reads | mRNA isolated from glandular trichomes of M. spicata at two leaf developmental stages: less than half full length, and full length. 50 nt Illumina HighSeq-2000 single end reads. |
Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| Transcriptome_20140624 | Contigs assembled from spearmint glandular trichome Illumina reads by the Trinity assembler. See file "annotations_20140624.xls" under heading "Other" for contig annotations and assembly methodology. |
Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| File | Description | Owner | Reference |
|---|---|---|---|
| Illumina short reads | mRNA isolated from glandular trichomes of Mentha aquatica at two leaf development stages: less than half full length, and full length. 50 nt Illumina HighSeq-2000 single end reads. | Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |
| Transcriptome_20140624 | Contigs assembled from watermint glandular trichome Illumina reads by the Trinity assembler. See file "annotations_20140624.xls" under heading "Other" for contig annotations and assembly methodology. |
Lange (WSU) | Ahkami A. et al. (2015) Mol Plant. 8(1):188-91 |